Interpretation
==============

Running the simulation, various fort.* files are generated, they are
space-seperated data files and each one of them corresponds to specific aspects
of the solution, we have:

Dispersion roots: fort.27
-------------------------
column one is the distance in meters from the LFS to the HFS centered at the major radius,
the other columns 2-13 are the 12 dispersion relations.

.. image:: figs/Roots.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET roots


Electric fields: fort.29
------------------------
This file contains the real and imaginary parts of the electric field in the +
direction, in the - direction and the parallel direction with column one
again being the major-radius centered distance in meters and:

* Re(E+): column 2
* Im(E+): column 3
* Re(E-): column 4
* Im(E-): column 5
* Re(E_par): column 6
* Im(E_par): column 7

.. image:: figs/Eplus.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET E+

.. image:: figs/Eminus.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET E-

.. image:: figs/Epar.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET E_par



Per species power absorption: fort.30
-------------------------------------
This shows the absorbed power per species per unity incoming flux, the order is as defined in :doc:`Input`
Column one is again the distance with:

* Species one: column 2
* Species two: column 3

And if more species are present, more columns will be present.

.. image:: figs/Pabs.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET power absorption

Power and flux: fort.31
-----------------------
Column one is the same as before with:

* P_tot: column 2
* Re(Flux): column 4
* Im(Flux): column 5

.. image:: figs/Flux_Re_Im.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET flux

.. image:: figs/Ptot.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET total power absorption

Current Drive: fort.38
----------------------
If the current drive was calculated, this file should exist with again distance being
column 1 and the Driven current densities [A/W/m^2]:

* J_{RF,tot}: column 2
* J_{RF,e}: column 3
* J_{RF,Min}: column 4

.. image:: figs/J_RF_CD.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET CD current

Current Drive: fort.39
----------------------
If the current drive was calculated, this file should exist with again distance being
column 1 and the Integrated driven currents [A/W]:

* I_{RF,tot}: column 2
* I_{RF,e}: column 3
* I_{RF,Min}: column 4

.. image:: figs/I_RF_CD.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET Integrated CD current

Density profiles, Temperature and Magnetic field: fort.60
---------------------------------------------------------
The first column again corresponds to the distance ,
for N species the corresponding densities [#/m^3] are located in the even columns 2,4,...,2N.
The temperature in a given species is located in the odd column following the density column so
3,5,...,2N+1
Finally the magnetic field [T] is located in column 2*N + 2.

.. image:: figs/Densities.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET density profile

.. image:: figs/Temperatures.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET temperature profile

.. image:: figs/B0.pdf
   :width: 200px
   :height: 100px
   :scale: 50 %
   :alt: Example JET magnetic field